Package index
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EMforCFR() - A function to estimate the relative case fatality ratio when reporting rates are time-varying and deaths are lagged because of survival time.
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cd.fitcd.fit-class - An S4 Class that stores a fitted coarse data object
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cd.fit.mcmccd.fit.mcmc-class - An S4 Class that stores a MCMC fit coarse data object
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dgammaOff1() - Function that calculates dgamma with a offset of 1 (i.e., 1 is equivalent to 0)
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dic.fit() - censored survival data
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dic.fit.mcmc() - Fits the distribution to the passed-in data using MCMC as implemented in MCMCpack.
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exp.win.lengths - Exposure window lengths from an influenza outbreak at a NYC school
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fluA.inc.per - Coarse incubation period data for influenza A
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get.obs.type() - Tries to guess the observation types (SIC, DIC, or exact).
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logLik(<cd.fit>) - Get the log-likelihood value of a
cd.fitorcd.fit.mcmcobject
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loglikhd() - Negative log likelihood for a dataset of interval-censored data, given a distribution and its parameters.
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mcmc.erlang() - Does a metropolis hastings for the Erlang distribution
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mcmcpack.ll() - posterior log likelihood function to pass to MCMCpack sampler
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nycH1N1 - Incubation period data from New York City Public Schools, 2009 H1N1 influenza outbreak
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pgammaOff1() - Function that calculates pgamma with a offset of 1 (i.e., 1 is equivalent to 0)
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precision.simulation()precision.simulation.exact()precision.simulation.coarse()generate.coarse.data() - Simulate incubation period analyses with coarse data
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simulated.outbreak.deaths - Simulated case and death reports from a fictional outbreak